This page was last updated on October 30th, 2019 at 11:25 pm<\/p>
In this tutorial we illustrate how to re-dock a known peptide into its native receptor.\u00a0We will redock a pseudophosphorylated Smad1 peptide into TPR domain of CHIP (PDB: 3Q47<\/a>).<\/span><\/span><\/p>\n In this tutorial you will learn<\/strong>:<\/p>\n Prerequisites<\/strong>:<\/p>\n PDBQT file is a file format designed for AutoDock programs. Compared with standard PDB file format, PDBQT file format added two columns for the partial charge and AutoDock atom type.<\/p>\n In this tutorial, we will start from two separate PDB files for the receptor and the peptide. The two files are separated based on PDB file downloaded directly from PDB<\/a>. Only the protein part is included in both files.<\/p>\n First, we will unzip the file we just downloaded.<\/p>\n\n
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Go back to ADCP Homepage<\/a>.<\/h2>\n<\/div>
<\/i>Convert PDB files to PDBQT files<\/h4><\/a><\/li>
<\/i>Generate target file<\/h4><\/a><\/li>
<\/i>Docking peptide<\/h4><\/a><\/li><\/ul><\/div>
<\/i>Convert PDB files to PDBQT files<\/h4><\/a><\/li><\/ul><\/div>
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Convert PDB files to PDBQT files.<\/h4>\n