{"id":300,"date":"2019-03-18T14:04:30","date_gmt":"2019-03-18T14:04:30","guid":{"rendered":"https:\/\/ccsb.scripps.edu\/autodock\/?page_id=300"},"modified":"2019-03-18T14:43:40","modified_gmt":"2019-03-18T14:43:40","slug":"citing","status":"publish","type":"page","link":"https:\/\/ccsb.scripps.edu\/autodocksuite\/citing\/","title":{"rendered":"Citing AutoDock"},"content":{"rendered":"

Citing AutoDock<\/h2><\/h1><\/div>
<\/div><\/div><\/div><\/div><\/div>

Virtual Screening with Raccoon<\/h3>\n

Forli, S., Huey, R., Pique, M. E., Sanner, M. F., Goodsell, D. S., & Olson, A. J. (2016). Computational protein-ligand docking and virtual drug screening with the AutoDock suite. Nature Protocols, 11(5), 905-919.<\/a><\/p>\n

AutoDock 4.2<\/h3>\n

Morris, G. M., Huey, R., Lindstrom, W., Sanner, M. F., Belew, R. K., Goodsell, D. S. and Olson, A. J. (2009) Autodock4 and AutoDockTools4: automated docking with selective receptor flexiblity.<\/a><\/span> J. Computational Chemistry<\/em> 2009, 16<\/strong>: 2785-91.<\/p>\n

AutoDock 3 & 4<\/h3>\n

Morris, G. M., Goodsell, D. S., Halliday, R.S., Huey, R., Hart, W. E., Belew, R. K. and Olson, A. J. (1998), Automated Docking Using a Lamarckian Genetic Algorithm and and Empirical Binding Free Energy Function<\/a><\/span> J. Computational Chemistry<\/em>, 19<\/strong>: 1639-1662.<\/p>\n

AutoDock 4 Scoring Function<\/h3>\n

Huey, R., Morris, G. M., Olson, A. J. and Goodsell, D. S. (2007), A Semiempirical Free Energy Force Field with Charge-Based Desolvation<\/a><\/span> J. Computational Chemistry<\/em>, 28<\/strong>: 1145-1152.<\/p>\n

AutoDock 2.4<\/h3>\n

Morris, G. M., Goodsell, D. S., Huey, R. and Olson, A. J. (1996), Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4<\/a><\/span>\u00a0J. Computer-Aided Molecular Design<\/em>, 10<\/strong>: 293-304.<\/p>\n

AutoDock 1<\/h3>\n

Goodsell, D. S. and Olson, A. J. (1990), Automated Docking of Substrates to Proteins by Simulated Annealing<\/a><\/span>\u00a0Proteins:Structure, Function and Genetics.<\/em>, 8<\/strong>: 195-202.<\/p>\n<\/div>

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