{"id":283,"date":"2019-07-12T16:38:56","date_gmt":"2019-07-12T16:38:56","guid":{"rendered":"https:\/\/ccsb.scripps.edu\/mgltools\/?page_id=283"},"modified":"2019-07-12T18:44:39","modified_gmt":"2019-07-12T18:44:39","slug":"1-5-6","status":"publish","type":"page","link":"https:\/\/ccsb.scripps.edu\/mgltools\/1-5-6\/","title":{"rendered":"1.5.6"},"content":{"rendered":"<p><div class=\"fusion-fullwidth fullwidth-box fusion-builder-row-1 nonhundred-percent-fullwidth non-hundred-percent-height-scrolling\" style=\"--awb-border-radius-top-left:0px;--awb-border-radius-top-right:0px;--awb-border-radius-bottom-right:0px;--awb-border-radius-bottom-left:0px;--awb-flex-wrap:wrap;\" ><div class=\"fusion-builder-row fusion-row\"><div class=\"fusion-layout-column fusion_builder_column fusion-builder-column-0 fusion_builder_column_1_1 1_1 fusion-one-full fusion-column-first fusion-column-last\" style=\"--awb-bg-size:cover;--awb-margin-bottom:0px;\"><div class=\"fusion-column-wrapper fusion-flex-column-wrapper-legacy\"><div class=\"fusion-text fusion-text-1\"><h3>MGLTools 1.5.6 documentation<\/h3>\n<\/div><div class=\"fusion-sep-clear\"><\/div><div class=\"fusion-separator fusion-full-width-sep\" style=\"margin-left: auto;margin-right: auto;margin-bottom:20px;width:100%;\"><div class=\"fusion-separator-border sep-shadow\" style=\"--awb-height:20px;--awb-amount:20px;background:radial-gradient(ellipse at 50% -50% , #e0dede 0px, rgba(255, 255, 255, 0) 80%) repeat scroll 0 0 rgba(0, 0, 0, 0);background:-webkit-radial-gradient(ellipse at 50% -50% , #e0dede 0px, rgba(255, 255, 255, 0) 80%) repeat scroll 0 0 rgba(0, 0, 0, 0);background:-moz-radial-gradient(ellipse at 50% -50% , #e0dede 0px, rgba(255, 255, 255, 0) 80%) repeat scroll 0 0 rgba(0, 0, 0, 0);background:-o-radial-gradient(ellipse at 50% -50% , #e0dede 0px, rgba(255, 255, 255, 0) 80%) repeat scroll 0 0 rgba(0, 0, 0, 0);\"><\/div><\/div><div class=\"fusion-sep-clear\"><\/div><div class=\"fusion-clearfix\"><\/div><\/div><\/div><\/div><\/div><div class=\"fusion-fullwidth fullwidth-box fusion-builder-row-2 nonhundred-percent-fullwidth non-hundred-percent-height-scrolling\" style=\"--awb-border-radius-top-left:0px;--awb-border-radius-top-right:0px;--awb-border-radius-bottom-right:0px;--awb-border-radius-bottom-left:0px;--awb-flex-wrap:wrap;\" ><div class=\"fusion-builder-row fusion-row\"><div class=\"fusion-layout-column fusion_builder_column fusion-builder-column-1 fusion_builder_column_1_2 1_2 fusion-one-half fusion-column-first\" style=\"--awb-bg-size:cover;width:50%;width:calc(50% - ( ( 4% ) * 0.5 ) );margin-right: 4%;\"><div class=\"fusion-column-wrapper fusion-flex-column-wrapper-legacy\"><div class=\"fusion-text fusion-text-2\"><p><i>MGLTools1.5.6<\/i> is an\u00a0open-source software suite comprising:<\/p>\n<p>PMV: the Python Molecular Viewer<\/p>\n<p>ADT: A graphical front end for AutoDock<\/p>\n<p>Vision: A visual programming environment<\/p>\n<\/div><div class=\"fusion-text fusion-text-3\"><p><a href=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/PmvTut1page-1.pdf\">Pmv Tutorial (PDF of PowerPoint slides 47Mb)\u00a0<\/a><\/p>\n<p><a href=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/VisionTut1Page.pdf\">Vision Tutorial (PDF of PowerPoint slides 15.8Mb)<\/a><\/p>\n<\/div><div class=\"fusion-text fusion-text-4\"><h3>Documentation<\/h3>\n<\/div><div class=\"fusion-content-boxes content-boxes columns row fusion-columns-1 fusion-columns-total-8 fusion-content-boxes-1 content-boxes-icon-on-side content-left\" style=\"--awb-body-color:#ffffff;--awb-title-color:#ffffff;--awb-hover-accent-color:#494e6b;--awb-circle-hover-accent-color:#494e6b;--awb-item-margin-bottom:40px;\" data-animationOffset=\"top-into-view\"><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-1 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box icon-hover-animation-pulsate\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Overview<\/h3><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-2 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box icon-hover-animation-pulsate\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Installing Pmv<\/h3><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-3 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box link-type-text icon-hover-animation-pulsate\" data-link=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-pmv-gui\/\" data-link-target=\"_self\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><a class=\"heading-link\" href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-pmv-gui\/\" target=\"_self\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">PMV's GUI<\/h3><\/a><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-4 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box link-type-text icon-hover-animation-pulsate\" data-link=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-dashboard\/\" data-link-target=\"_self\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><a class=\"heading-link\" href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-dashboard\/\" target=\"_self\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Dashboard<\/h3><\/a><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-5 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box link-type-text icon-hover-animation-pulsate\" data-link=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-tool-panel\/\" data-link-target=\"_self\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><a class=\"heading-link\" href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-tool-panel\/\" target=\"_self\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Tools panel<\/h3><\/a><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-6 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box link-type-text icon-hover-animation-pulsate\" data-link=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-session\/\" data-link-target=\"_self\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><a class=\"heading-link\" href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-session\/\" target=\"_self\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Saving your session<\/h3><\/a><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-7 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box link-type-text icon-hover-animation-pulsate\" data-link=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-selection-strings\/\" data-link-target=\"_self\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><a class=\"heading-link\" href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-selection-strings\/\" target=\"_self\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Selection strings<\/h3><\/a><\/div><\/div><\/div><div style=\"--awb-backgroundcolor:#9acae0;--awb-content-padding-left:64px;\" class=\"fusion-column content-box-column content-box-column content-box-column-8 col-lg-12 col-md-12 col-sm-12 fusion-content-box-hover content-box-column-last content-box-column-last-in-row\"><div class=\"col content-box-wrapper content-wrapper-background link-area-box link-type-text icon-hover-animation-pulsate\" data-link=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-release-notes\/\" data-link-target=\"_self\" data-animationOffset=\"top-into-view\"><div class=\"heading heading-with-icon icon-left\"><a class=\"heading-link\" href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-release-notes\/\" target=\"_self\"><div class=\"icon\"><i style=\"border-color:#ffffff;border-width:1px;background-color:#494e6b;box-sizing:content-box;height:42px;width:42px;line-height:42px;border-radius:50%;font-size:21px;\" aria-hidden=\"true\" class=\"fontawesome-icon fa-university fas circle-yes\"><\/i><\/div><h3 class=\"content-box-heading\" style=\"--h3_typography-font-size:18px;line-height:23px;padding-left:64px;\">Release Notes<\/h3><\/a><\/div><\/div><\/div><div class=\"fusion-clearfix\"><\/div><\/div><div class=\"fusion-clearfix\"><\/div><\/div><\/div><div class=\"fusion-layout-column fusion_builder_column fusion-builder-column-2 fusion_builder_column_1_2 1_2 fusion-one-half fusion-column-last\" style=\"--awb-bg-size:cover;width:50%;width:calc(50% - ( ( 4% ) * 0.5 ) );\"><div class=\"fusion-column-wrapper fusion-flex-column-wrapper-legacy\"><div class=\"fusion-title title fusion-title-1 fusion-sep-none fusion-title-text fusion-title-size-one\" style=\"--awb-margin-top-small:10px;--awb-margin-right-small:0px;--awb-margin-bottom-small:10px;--awb-margin-left-small:0px;\"><h1 class=\"fusion-title-heading title-heading-left\" style=\"margin:0;\"><h3 style=\"text-align: center;\">FAQ<\/h3><\/h1><\/div><div class=\"fusion-clearfix\"><\/div><\/div><\/div><\/div><\/div><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-283","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages\/283","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/comments?post=283"}],"version-history":[{"count":6,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages\/283\/revisions"}],"predecessor-version":[{"id":446,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages\/283\/revisions\/446"}],"wp:attachment":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/media?parent=283"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}