{"id":290,"date":"2019-07-12T16:57:36","date_gmt":"2019-07-12T16:57:36","guid":{"rendered":"https:\/\/ccsb.scripps.edu\/mgltools\/?page_id=290"},"modified":"2019-07-12T17:13:48","modified_gmt":"2019-07-12T17:13:48","slug":"doc-pmv-gui","status":"publish","type":"page","link":"https:\/\/ccsb.scripps.edu\/mgltools\/doc-pmv-gui\/","title":{"rendered":"doc PMV GUI"},"content":{"rendered":"<h2>Pmv\u2019s GUI elements<\/h2>\n<p><img decoding=\"async\" width=\"944\" height=\"638\" class=\"wp-image-291\" src=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011.png\" alt=\"Macintosh HD:Users:michel:Desktop:Screen shot 2011-03-17 at 2.51.12 PM.png\" srcset=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-200x135.png 200w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-300x203.png 300w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-400x270.png 400w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-600x406.png 600w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-768x519.png 768w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-800x541.png 800w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011.png 944w\" sizes=\"(max-width: 944px) 100vw, 944px\" \/><\/p>\n<p>Pmv\u2019s Graphical User Interface (GUI) is composed of 1) a menu bar at the top, 2) a toolbar below the menu bar, 3) a panel in which various tools place their controls (in this example the wee the <a href=\"https:\/\/ccsb.scripps.edu\/mgltools\/doc-156-dashboard\/\">Dashboard<\/a> which is the default panel shown in this area), 4) 3D Viewer window in which the molecules are rendered interactively as 3D objects, and 6) a status bar.<\/p>\n<h3>Pmv Menus:<\/h3>\n<p>Before the addition of the Dashboard, most commands in Pmv were accessed through menus. Note that Pmv allows for the dynamic loading of commands as they are needed, hence if a particular command does not appear in the menus it is worthwhile using File -&gt; Browse Commands to find out if the desired command is available in a module that is not currently loaded. Conversely, on can edit the _pmvrc file to prevent loading some commands that are not needed.<\/p>\n<h3>Pmv Toolbar:<\/h3>\n<p>The Pmv Toolbar provides button that are short cuts for some common actions on Pmv.<\/p>\n<p><img decoding=\"async\" class=\"wp-image-292\" src=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1.png\" alt=\"Macintosh HD:Users:michel:Desktop:Screen shot 2011-03-17 at 3.20.19 PM.png\" width=\"594\" height=\"464\" srcset=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1-200x156.png 200w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1-300x234.png 300w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1-400x313.png 400w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1-600x469.png 600w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1-768x600.png 768w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1-800x625.png 800w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/macintosh-hdusersmicheldesktopscreen-shot-2011-1.png 860w\" sizes=\"(max-width: 594px) 100vw, 594px\" \/><\/p>\n<h2>Pmv Status Bar:<\/h2>\n<p><img decoding=\"async\" class=\"wp-image-293\" src=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm-.png\" alt=\":::::Desktop:Screen shot 2011-03-17 at 3.27.32 PM.png\" width=\"681\" height=\"301\" srcset=\"https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm--200x88.png 200w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm--300x133.png 300w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm--400x177.png 400w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm--600x265.png 600w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm--768x339.png 768w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm--800x354.png 800w, https:\/\/ccsb.scripps.edu\/mgltools\/wp-content\/uploads\/sites\/42\/2019\/07\/desktopscreen-shot-2011-03-17-at-3-27-32-pm-.png 1018w\" sizes=\"(max-width: 681px) 100vw, 681px\" \/><\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Pmv\u2019s GUI elements Pmv\u2019s Graphical User Interface (GUI) is composed  [&#8230;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-290","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages\/290","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/comments?post=290"}],"version-history":[{"count":3,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages\/290\/revisions"}],"predecessor-version":[{"id":355,"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/pages\/290\/revisions\/355"}],"wp:attachment":[{"href":"https:\/\/ccsb.scripps.edu\/mgltools\/wp-json\/wp\/v2\/media?parent=290"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}